pandas_genomics.sim.generate_random_gt¶
-
pandas_genomics.sim.
generate_random_gt
(variant: pandas_genomics.scalars.Variant, alt_allele_freq: Union[List[float], float], n: int = 1000, random_seed: int = 1855) → pandas_genomics.arrays.genotype_array.GenotypeArray[source]¶ Simulate random genotypes according to the provided allele frequencies
- Parameters
- variant: Variant
- alt_allele_freq: float or List[float]
Allele frequencies for each alternate allele in the variant (Bialleleic variants may specify a single float value)
- n: int, default 1000
How many genotypes to simulate
- random_seed: int, default 1855
- Returns
- GenotypeArray