pandas_genomics.sim.generate_random_gt

pandas_genomics.sim.generate_random_gt(variant: pandas_genomics.scalars.Variant, alt_allele_freq: Union[List[float], float], n: int = 1000, random_seed: int = 1855) → pandas_genomics.arrays.genotype_array.GenotypeArray

Simulate random genotypes according to the provided allele frequencies

Parameters

variant: Variant

alt_allele_freq: float or List[float]

Allele frequencies for each alternate allele in the variant (Bialleleic variants may specify a single float value)

n: int, default 1000

How many genotypes to simulate

random_seed: int, default 1855

Returns

GenotypeArray